500 lines
17 KiB
Python
500 lines
17 KiB
Python
|
"""Functions for generating line graphs."""
|
||
|
from collections import defaultdict
|
||
|
from functools import partial
|
||
|
from itertools import combinations
|
||
|
|
||
|
import networkx as nx
|
||
|
from networkx.utils import arbitrary_element
|
||
|
from networkx.utils.decorators import not_implemented_for
|
||
|
|
||
|
__all__ = ["line_graph", "inverse_line_graph"]
|
||
|
|
||
|
|
||
|
@nx._dispatch
|
||
|
def line_graph(G, create_using=None):
|
||
|
r"""Returns the line graph of the graph or digraph `G`.
|
||
|
|
||
|
The line graph of a graph `G` has a node for each edge in `G` and an
|
||
|
edge joining those nodes if the two edges in `G` share a common node. For
|
||
|
directed graphs, nodes are adjacent exactly when the edges they represent
|
||
|
form a directed path of length two.
|
||
|
|
||
|
The nodes of the line graph are 2-tuples of nodes in the original graph (or
|
||
|
3-tuples for multigraphs, with the key of the edge as the third element).
|
||
|
|
||
|
For information about self-loops and more discussion, see the **Notes**
|
||
|
section below.
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : graph
|
||
|
A NetworkX Graph, DiGraph, MultiGraph, or MultiDigraph.
|
||
|
create_using : NetworkX graph constructor, optional (default=nx.Graph)
|
||
|
Graph type to create. If graph instance, then cleared before populated.
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
L : graph
|
||
|
The line graph of G.
|
||
|
|
||
|
Examples
|
||
|
--------
|
||
|
>>> G = nx.star_graph(3)
|
||
|
>>> L = nx.line_graph(G)
|
||
|
>>> print(sorted(map(sorted, L.edges()))) # makes a 3-clique, K3
|
||
|
[[(0, 1), (0, 2)], [(0, 1), (0, 3)], [(0, 2), (0, 3)]]
|
||
|
|
||
|
Edge attributes from `G` are not copied over as node attributes in `L`, but
|
||
|
attributes can be copied manually:
|
||
|
|
||
|
>>> G = nx.path_graph(4)
|
||
|
>>> G.add_edges_from((u, v, {"tot": u+v}) for u, v in G.edges)
|
||
|
>>> G.edges(data=True)
|
||
|
EdgeDataView([(0, 1, {'tot': 1}), (1, 2, {'tot': 3}), (2, 3, {'tot': 5})])
|
||
|
>>> H = nx.line_graph(G)
|
||
|
>>> H.add_nodes_from((node, G.edges[node]) for node in H)
|
||
|
>>> H.nodes(data=True)
|
||
|
NodeDataView({(0, 1): {'tot': 1}, (2, 3): {'tot': 5}, (1, 2): {'tot': 3}})
|
||
|
|
||
|
Notes
|
||
|
-----
|
||
|
Graph, node, and edge data are not propagated to the new graph. For
|
||
|
undirected graphs, the nodes in G must be sortable, otherwise the
|
||
|
constructed line graph may not be correct.
|
||
|
|
||
|
*Self-loops in undirected graphs*
|
||
|
|
||
|
For an undirected graph `G` without multiple edges, each edge can be
|
||
|
written as a set `\{u, v\}`. Its line graph `L` has the edges of `G` as
|
||
|
its nodes. If `x` and `y` are two nodes in `L`, then `\{x, y\}` is an edge
|
||
|
in `L` if and only if the intersection of `x` and `y` is nonempty. Thus,
|
||
|
the set of all edges is determined by the set of all pairwise intersections
|
||
|
of edges in `G`.
|
||
|
|
||
|
Trivially, every edge in G would have a nonzero intersection with itself,
|
||
|
and so every node in `L` should have a self-loop. This is not so
|
||
|
interesting, and the original context of line graphs was with simple
|
||
|
graphs, which had no self-loops or multiple edges. The line graph was also
|
||
|
meant to be a simple graph and thus, self-loops in `L` are not part of the
|
||
|
standard definition of a line graph. In a pairwise intersection matrix,
|
||
|
this is analogous to excluding the diagonal entries from the line graph
|
||
|
definition.
|
||
|
|
||
|
Self-loops and multiple edges in `G` add nodes to `L` in a natural way, and
|
||
|
do not require any fundamental changes to the definition. It might be
|
||
|
argued that the self-loops we excluded before should now be included.
|
||
|
However, the self-loops are still "trivial" in some sense and thus, are
|
||
|
usually excluded.
|
||
|
|
||
|
*Self-loops in directed graphs*
|
||
|
|
||
|
For a directed graph `G` without multiple edges, each edge can be written
|
||
|
as a tuple `(u, v)`. Its line graph `L` has the edges of `G` as its
|
||
|
nodes. If `x` and `y` are two nodes in `L`, then `(x, y)` is an edge in `L`
|
||
|
if and only if the tail of `x` matches the head of `y`, for example, if `x
|
||
|
= (a, b)` and `y = (b, c)` for some vertices `a`, `b`, and `c` in `G`.
|
||
|
|
||
|
Due to the directed nature of the edges, it is no longer the case that
|
||
|
every edge in `G` should have a self-loop in `L`. Now, the only time
|
||
|
self-loops arise is if a node in `G` itself has a self-loop. So such
|
||
|
self-loops are no longer "trivial" but instead, represent essential
|
||
|
features of the topology of `G`. For this reason, the historical
|
||
|
development of line digraphs is such that self-loops are included. When the
|
||
|
graph `G` has multiple edges, once again only superficial changes are
|
||
|
required to the definition.
|
||
|
|
||
|
References
|
||
|
----------
|
||
|
* Harary, Frank, and Norman, Robert Z., "Some properties of line digraphs",
|
||
|
Rend. Circ. Mat. Palermo, II. Ser. 9 (1960), 161--168.
|
||
|
* Hemminger, R. L.; Beineke, L. W. (1978), "Line graphs and line digraphs",
|
||
|
in Beineke, L. W.; Wilson, R. J., Selected Topics in Graph Theory,
|
||
|
Academic Press Inc., pp. 271--305.
|
||
|
|
||
|
"""
|
||
|
if G.is_directed():
|
||
|
L = _lg_directed(G, create_using=create_using)
|
||
|
else:
|
||
|
L = _lg_undirected(G, selfloops=False, create_using=create_using)
|
||
|
return L
|
||
|
|
||
|
|
||
|
def _lg_directed(G, create_using=None):
|
||
|
"""Returns the line graph L of the (multi)digraph G.
|
||
|
|
||
|
Edges in G appear as nodes in L, represented as tuples of the form (u,v)
|
||
|
or (u,v,key) if G is a multidigraph. A node in L corresponding to the edge
|
||
|
(u,v) is connected to every node corresponding to an edge (v,w).
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : digraph
|
||
|
A directed graph or directed multigraph.
|
||
|
create_using : NetworkX graph constructor, optional
|
||
|
Graph type to create. If graph instance, then cleared before populated.
|
||
|
Default is to use the same graph class as `G`.
|
||
|
|
||
|
"""
|
||
|
L = nx.empty_graph(0, create_using, default=G.__class__)
|
||
|
|
||
|
# Create a graph specific edge function.
|
||
|
get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges
|
||
|
|
||
|
for from_node in get_edges():
|
||
|
# from_node is: (u,v) or (u,v,key)
|
||
|
L.add_node(from_node)
|
||
|
for to_node in get_edges(from_node[1]):
|
||
|
L.add_edge(from_node, to_node)
|
||
|
|
||
|
return L
|
||
|
|
||
|
|
||
|
def _lg_undirected(G, selfloops=False, create_using=None):
|
||
|
"""Returns the line graph L of the (multi)graph G.
|
||
|
|
||
|
Edges in G appear as nodes in L, represented as sorted tuples of the form
|
||
|
(u,v), or (u,v,key) if G is a multigraph. A node in L corresponding to
|
||
|
the edge {u,v} is connected to every node corresponding to an edge that
|
||
|
involves u or v.
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : graph
|
||
|
An undirected graph or multigraph.
|
||
|
selfloops : bool
|
||
|
If `True`, then self-loops are included in the line graph. If `False`,
|
||
|
they are excluded.
|
||
|
create_using : NetworkX graph constructor, optional (default=nx.Graph)
|
||
|
Graph type to create. If graph instance, then cleared before populated.
|
||
|
|
||
|
Notes
|
||
|
-----
|
||
|
The standard algorithm for line graphs of undirected graphs does not
|
||
|
produce self-loops.
|
||
|
|
||
|
"""
|
||
|
L = nx.empty_graph(0, create_using, default=G.__class__)
|
||
|
|
||
|
# Graph specific functions for edges.
|
||
|
get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges
|
||
|
|
||
|
# Determine if we include self-loops or not.
|
||
|
shift = 0 if selfloops else 1
|
||
|
|
||
|
# Introduce numbering of nodes
|
||
|
node_index = {n: i for i, n in enumerate(G)}
|
||
|
|
||
|
# Lift canonical representation of nodes to edges in line graph
|
||
|
edge_key_function = lambda edge: (node_index[edge[0]], node_index[edge[1]])
|
||
|
|
||
|
edges = set()
|
||
|
for u in G:
|
||
|
# Label nodes as a sorted tuple of nodes in original graph.
|
||
|
# Decide on representation of {u, v} as (u, v) or (v, u) depending on node_index.
|
||
|
# -> This ensures a canonical representation and avoids comparing values of different types.
|
||
|
nodes = [tuple(sorted(x[:2], key=node_index.get)) + x[2:] for x in get_edges(u)]
|
||
|
|
||
|
if len(nodes) == 1:
|
||
|
# Then the edge will be an isolated node in L.
|
||
|
L.add_node(nodes[0])
|
||
|
|
||
|
# Add a clique of `nodes` to graph. To prevent double adding edges,
|
||
|
# especially important for multigraphs, we store the edges in
|
||
|
# canonical form in a set.
|
||
|
for i, a in enumerate(nodes):
|
||
|
edges.update(
|
||
|
[
|
||
|
tuple(sorted((a, b), key=edge_key_function))
|
||
|
for b in nodes[i + shift :]
|
||
|
]
|
||
|
)
|
||
|
|
||
|
L.add_edges_from(edges)
|
||
|
return L
|
||
|
|
||
|
|
||
|
@not_implemented_for("directed")
|
||
|
@not_implemented_for("multigraph")
|
||
|
@nx._dispatch
|
||
|
def inverse_line_graph(G):
|
||
|
"""Returns the inverse line graph of graph G.
|
||
|
|
||
|
If H is a graph, and G is the line graph of H, such that G = L(H).
|
||
|
Then H is the inverse line graph of G.
|
||
|
|
||
|
Not all graphs are line graphs and these do not have an inverse line graph.
|
||
|
In these cases this function raises a NetworkXError.
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : graph
|
||
|
A NetworkX Graph
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
H : graph
|
||
|
The inverse line graph of G.
|
||
|
|
||
|
Raises
|
||
|
------
|
||
|
NetworkXNotImplemented
|
||
|
If G is directed or a multigraph
|
||
|
|
||
|
NetworkXError
|
||
|
If G is not a line graph
|
||
|
|
||
|
Notes
|
||
|
-----
|
||
|
This is an implementation of the Roussopoulos algorithm[1]_.
|
||
|
|
||
|
If G consists of multiple components, then the algorithm doesn't work.
|
||
|
You should invert every component separately:
|
||
|
|
||
|
>>> K5 = nx.complete_graph(5)
|
||
|
>>> P4 = nx.Graph([("a", "b"), ("b", "c"), ("c", "d")])
|
||
|
>>> G = nx.union(K5, P4)
|
||
|
>>> root_graphs = []
|
||
|
>>> for comp in nx.connected_components(G):
|
||
|
... root_graphs.append(nx.inverse_line_graph(G.subgraph(comp)))
|
||
|
>>> len(root_graphs)
|
||
|
2
|
||
|
|
||
|
References
|
||
|
----------
|
||
|
.. [1] Roussopoulos, N.D. , "A max {m, n} algorithm for determining the graph H from
|
||
|
its line graph G", Information Processing Letters 2, (1973), 108--112, ISSN 0020-0190,
|
||
|
`DOI link <https://doi.org/10.1016/0020-0190(73)90029-X>`_
|
||
|
|
||
|
"""
|
||
|
if G.number_of_nodes() == 0:
|
||
|
return nx.empty_graph(1)
|
||
|
elif G.number_of_nodes() == 1:
|
||
|
v = arbitrary_element(G)
|
||
|
a = (v, 0)
|
||
|
b = (v, 1)
|
||
|
H = nx.Graph([(a, b)])
|
||
|
return H
|
||
|
elif G.number_of_nodes() > 1 and G.number_of_edges() == 0:
|
||
|
msg = (
|
||
|
"inverse_line_graph() doesn't work on an edgeless graph. "
|
||
|
"Please use this function on each component separately."
|
||
|
)
|
||
|
raise nx.NetworkXError(msg)
|
||
|
|
||
|
if nx.number_of_selfloops(G) != 0:
|
||
|
msg = (
|
||
|
"A line graph as generated by NetworkX has no selfloops, so G has no "
|
||
|
"inverse line graph. Please remove the selfloops from G and try again."
|
||
|
)
|
||
|
raise nx.NetworkXError(msg)
|
||
|
|
||
|
starting_cell = _select_starting_cell(G)
|
||
|
P = _find_partition(G, starting_cell)
|
||
|
# count how many times each vertex appears in the partition set
|
||
|
P_count = {u: 0 for u in G.nodes}
|
||
|
for p in P:
|
||
|
for u in p:
|
||
|
P_count[u] += 1
|
||
|
|
||
|
if max(P_count.values()) > 2:
|
||
|
msg = "G is not a line graph (vertex found in more than two partition cells)"
|
||
|
raise nx.NetworkXError(msg)
|
||
|
W = tuple((u,) for u in P_count if P_count[u] == 1)
|
||
|
H = nx.Graph()
|
||
|
H.add_nodes_from(P)
|
||
|
H.add_nodes_from(W)
|
||
|
for a, b in combinations(H.nodes, 2):
|
||
|
if any(a_bit in b for a_bit in a):
|
||
|
H.add_edge(a, b)
|
||
|
return H
|
||
|
|
||
|
|
||
|
def _triangles(G, e):
|
||
|
"""Return list of all triangles containing edge e"""
|
||
|
u, v = e
|
||
|
if u not in G:
|
||
|
raise nx.NetworkXError(f"Vertex {u} not in graph")
|
||
|
if v not in G[u]:
|
||
|
raise nx.NetworkXError(f"Edge ({u}, {v}) not in graph")
|
||
|
triangle_list = []
|
||
|
for x in G[u]:
|
||
|
if x in G[v]:
|
||
|
triangle_list.append((u, v, x))
|
||
|
return triangle_list
|
||
|
|
||
|
|
||
|
def _odd_triangle(G, T):
|
||
|
"""Test whether T is an odd triangle in G
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : NetworkX Graph
|
||
|
T : 3-tuple of vertices forming triangle in G
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
True is T is an odd triangle
|
||
|
False otherwise
|
||
|
|
||
|
Raises
|
||
|
------
|
||
|
NetworkXError
|
||
|
T is not a triangle in G
|
||
|
|
||
|
Notes
|
||
|
-----
|
||
|
An odd triangle is one in which there exists another vertex in G which is
|
||
|
adjacent to either exactly one or exactly all three of the vertices in the
|
||
|
triangle.
|
||
|
|
||
|
"""
|
||
|
for u in T:
|
||
|
if u not in G.nodes():
|
||
|
raise nx.NetworkXError(f"Vertex {u} not in graph")
|
||
|
for e in list(combinations(T, 2)):
|
||
|
if e[0] not in G[e[1]]:
|
||
|
raise nx.NetworkXError(f"Edge ({e[0]}, {e[1]}) not in graph")
|
||
|
|
||
|
T_neighbors = defaultdict(int)
|
||
|
for t in T:
|
||
|
for v in G[t]:
|
||
|
if v not in T:
|
||
|
T_neighbors[v] += 1
|
||
|
return any(T_neighbors[v] in [1, 3] for v in T_neighbors)
|
||
|
|
||
|
|
||
|
def _find_partition(G, starting_cell):
|
||
|
"""Find a partition of the vertices of G into cells of complete graphs
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : NetworkX Graph
|
||
|
starting_cell : tuple of vertices in G which form a cell
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
List of tuples of vertices of G
|
||
|
|
||
|
Raises
|
||
|
------
|
||
|
NetworkXError
|
||
|
If a cell is not a complete subgraph then G is not a line graph
|
||
|
"""
|
||
|
G_partition = G.copy()
|
||
|
P = [starting_cell] # partition set
|
||
|
G_partition.remove_edges_from(list(combinations(starting_cell, 2)))
|
||
|
# keep list of partitioned nodes which might have an edge in G_partition
|
||
|
partitioned_vertices = list(starting_cell)
|
||
|
while G_partition.number_of_edges() > 0:
|
||
|
# there are still edges left and so more cells to be made
|
||
|
u = partitioned_vertices.pop()
|
||
|
deg_u = len(G_partition[u])
|
||
|
if deg_u != 0:
|
||
|
# if u still has edges then we need to find its other cell
|
||
|
# this other cell must be a complete subgraph or else G is
|
||
|
# not a line graph
|
||
|
new_cell = [u] + list(G_partition[u])
|
||
|
for u in new_cell:
|
||
|
for v in new_cell:
|
||
|
if (u != v) and (v not in G_partition[u]):
|
||
|
msg = (
|
||
|
"G is not a line graph "
|
||
|
"(partition cell not a complete subgraph)"
|
||
|
)
|
||
|
raise nx.NetworkXError(msg)
|
||
|
P.append(tuple(new_cell))
|
||
|
G_partition.remove_edges_from(list(combinations(new_cell, 2)))
|
||
|
partitioned_vertices += new_cell
|
||
|
return P
|
||
|
|
||
|
|
||
|
def _select_starting_cell(G, starting_edge=None):
|
||
|
"""Select a cell to initiate _find_partition
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
G : NetworkX Graph
|
||
|
starting_edge: an edge to build the starting cell from
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
Tuple of vertices in G
|
||
|
|
||
|
Raises
|
||
|
------
|
||
|
NetworkXError
|
||
|
If it is determined that G is not a line graph
|
||
|
|
||
|
Notes
|
||
|
-----
|
||
|
If starting edge not specified then pick an arbitrary edge - doesn't
|
||
|
matter which. However, this function may call itself requiring a
|
||
|
specific starting edge. Note that the r, s notation for counting
|
||
|
triangles is the same as in the Roussopoulos paper cited above.
|
||
|
"""
|
||
|
if starting_edge is None:
|
||
|
e = arbitrary_element(G.edges())
|
||
|
else:
|
||
|
e = starting_edge
|
||
|
if e[0] not in G.nodes():
|
||
|
raise nx.NetworkXError(f"Vertex {e[0]} not in graph")
|
||
|
if e[1] not in G[e[0]]:
|
||
|
msg = f"starting_edge ({e[0]}, {e[1]}) is not in the Graph"
|
||
|
raise nx.NetworkXError(msg)
|
||
|
e_triangles = _triangles(G, e)
|
||
|
r = len(e_triangles)
|
||
|
if r == 0:
|
||
|
# there are no triangles containing e, so the starting cell is just e
|
||
|
starting_cell = e
|
||
|
elif r == 1:
|
||
|
# there is exactly one triangle, T, containing e. If other 2 edges
|
||
|
# of T belong only to this triangle then T is starting cell
|
||
|
T = e_triangles[0]
|
||
|
a, b, c = T
|
||
|
# ab was original edge so check the other 2 edges
|
||
|
ac_edges = len(_triangles(G, (a, c)))
|
||
|
bc_edges = len(_triangles(G, (b, c)))
|
||
|
if ac_edges == 1:
|
||
|
if bc_edges == 1:
|
||
|
starting_cell = T
|
||
|
else:
|
||
|
return _select_starting_cell(G, starting_edge=(b, c))
|
||
|
else:
|
||
|
return _select_starting_cell(G, starting_edge=(a, c))
|
||
|
else:
|
||
|
# r >= 2 so we need to count the number of odd triangles, s
|
||
|
s = 0
|
||
|
odd_triangles = []
|
||
|
for T in e_triangles:
|
||
|
if _odd_triangle(G, T):
|
||
|
s += 1
|
||
|
odd_triangles.append(T)
|
||
|
if r == 2 and s == 0:
|
||
|
# in this case either triangle works, so just use T
|
||
|
starting_cell = T
|
||
|
elif r - 1 <= s <= r:
|
||
|
# check if odd triangles containing e form complete subgraph
|
||
|
triangle_nodes = set()
|
||
|
for T in odd_triangles:
|
||
|
for x in T:
|
||
|
triangle_nodes.add(x)
|
||
|
|
||
|
for u in triangle_nodes:
|
||
|
for v in triangle_nodes:
|
||
|
if u != v and (v not in G[u]):
|
||
|
msg = (
|
||
|
"G is not a line graph (odd triangles "
|
||
|
"do not form complete subgraph)"
|
||
|
)
|
||
|
raise nx.NetworkXError(msg)
|
||
|
# otherwise then we can use this as the starting cell
|
||
|
starting_cell = tuple(triangle_nodes)
|
||
|
|
||
|
else:
|
||
|
msg = (
|
||
|
"G is not a line graph (incorrect number of "
|
||
|
"odd triangles around starting edge)"
|
||
|
)
|
||
|
raise nx.NetworkXError(msg)
|
||
|
return starting_cell
|